We are having problem with the rewrites for the catalog disappearing after updating and flushing all the caches as well as possible problem with itoris tabs plugin. Sites had been never updated since 2013, a lot of hack files cleaned out, bad code cleaned from files, etc;
Did an upgrade to latest 1.9* and ironed out some issues then either the cache flush or another action wiped out all the pages and shop stuff. Example: http://magetest.onejungle.com/multi-day-tours/over-5-days
I have done all possible as server admin. We have different revisions of the site. A dev site and old site, and so on.
Its a joomla/magento magebridge combo
We seem to have everything fixed, just problem with rewrites and itoris slider.
Already tried restoring the rewrite folder, cant do all of db as new working db has been upgraded and errors out.
There may be another minor issue or two but for the most part just about everything has been fixed besides these issues. But if you discover something...