Hire the best Genomic Data Analysis professionals

Check out Genomic Data Analysis professionals with the skills you need for your next job.
  • $50 hourly
    With extensive experience in R, I am skilled in handling big data and reformatting it, filtering it in an efficient manner. This also allows me to perform any kind of statistical analysis and machine learning with research-grade graphs as outputs. I am proficient in popular R packages such as ggplot2, tidyr, stringr, and dplyr, and have even created a few shiny applications available on my Github. My bash skills allow me to handle big data and reformat it, filter it in an efficient way, making me an asset for any project that requires efficient data processing. In LaTeX, I have the ability to produce well-designed and professional reports that clearly communicate complex information. I have a track record of delivering quality work, as demonstrated by my pipelines for genomic data and my active participation in relevant communities, including my Github profile and other networks. In conclusion, I am a skilled and dedicated professional with a strong background in bioinformatics and data analysis. I am confident in my ability to bring value to any project that requires my skills and expertise.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Microbiology
    Data Visualization
    Genetics
    Genomics
    ggplot2
    Bioinformatics
    Statistics
    Data Analysis
    Big Data
    Biostatistics
    R Shiny
    Quantitative Analysis
    Statistical Analysis
    Data Cleaning
    Machine Learning
    R
  • $35 hourly
    I hold a first degree and Ph.D in bioinformatics field. As an accomplished bioinformaticist with over many years of experience in the field of bioinformatics research. I have a proven record in publication and published 31 high impact papers. I have great skills in a variety of bioinformatics analysis such as transcriptome, whole genome, exon, metagenomics and bacterial genome analysis. I am also able to create a pipeline with the programming language like Python, Perl and R. I am also familiar with Mathematic and statistic analysis as I am currently also a Mathematic and statistic lecturer at University level. Math topics like algebra, calculus, probability and trigonometry are the usual topic I teach in University. I also have experience in using Statistic software like SPSS, STATA, Excel and R. I also know about Machine learning topics such as (clustering, SVM and other algorithms) Below is the list of the Bioinformatic analysis I am familiar with: • Next-generation sequencing analysis (RNA-seq, Whole-genome sequencing and Exome sequencing) • Bacterial genome analysis • Genome assembly and annotation • Metagenomics analysis • Comparative genomic analysis • Comparative pathogenomics analysis • Phylogenetic analysis • Pan-genome analysis • Transmission network analysis • Familiar with few programming languages such as Perl, Phyton, Java • Capable to develop a bioinformatics pipeline • Differential gene expression analysis • GWAS • SNP variant analysis • ANI, AAI and GGDC analysis Familiar Statistics Software: • SPSS • R (Rstudio) • Python (Jupyter notebook) Familiar Bioinformatics Software: Genome assembly softwares: • CLC Genomics Workbench • SPAdes Genome Assembler • Assembly By Short Sequences (ABySS) • Velvet assembler • SOAPdenovo • SSPACE • MaSuRCA • Unicycler Genome mapping, alignment and processing tools: • Bowtie/Bowtie2 • Burrows-Wheeler Aligner (BWA) • MUMmer (NUCmer and PROmer) • SAMtools • BAMtools • Picard tools • ClustalW • BLAST Genome annotation software: • Rapid Annotation using Subsystem Technology (RAST) • DAVID Functional Annotation • GeneMark • Blast2GO Metagenomics analysis tools: • MEtaGenome ANalyzer (MEGAN5) • DIAMOND QIIME2 Phylogenetic tree analysis tools: • Molecular Evolutionary Genetics Analysis (MEGA) • Fasttree RNA-sequencing: • Cufflinks • Trinity • EdgeR • DESeq • DESeq2 Exome-sequencing: • ANNOVAR • SnpEff and SnpSift • GATK Other genomic analysis tools: • Pan-Genome Analysis Pipeline (PGAP) • PGAweb • IslandViewer • PHAge Search Tools (PHAST) • BadiRate • Circos • DNAPlotter
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Microsoft Excel
    Statistics
    RStudio
    Bioinformatics
    Scripting
    Python Script
    Linux
    Science Tutoring
    Genetics
    Biostatistics
    R
    Python
    Bayesian Statistics
  • $70 hourly
    MSc of Bioinformatics and Systems Biology. I am experienced in Next Generation Sequencing data analysis, molecular biology, programming with R, Python, and C# and am motivated for learning and applying multi-discipline problem-solving approaches in life sciences. I am experienced in writing academic literature in biology (bioinformatics, molecular biology, biotechnology, microbiology, and physiology).
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Data Science
    Content Writing
    Scientific Writing
    R
    Python
    Biology
    Bioinformatics
    Molecular Biology
    Biotechnology
  • $20 hourly
    🧬 Experienced Bioinformatician & Statistical Data Analyst at Your Service! 🌟 Are you looking for a skilled professional who can seamlessly integrate the worlds of bioinformatics and statistical data analysis? Look no further! 🚀 🔬 About Me: I am a highly qualified and passionate bioinformatician with a strong background in statistical data analysis. With 5 years of experience in the field, I have successfully supported numerous clients in unlocking the hidden insights within their biological data. My expertise lies in harnessing the power of advanced computational tools and statistical techniques to extract meaningful information and drive data-driven decision-making. 💼 Services I Offer: 🔍 Bioinformatics Analysis: From genomics and transcriptomics to proteomics and metabolomics, I specialize in analyzing large-scale biological datasets. I can assist you in performing quality control, data preprocessing, differential gene expression analysis, pathway analysis, variant calling, and much more. My goal is to help you unravel the complexities of your biological data and generate valuable insights. 📈 Statistical Data Analysis: As a seasoned statistical data analyst, I am proficient in utilizing cutting-edge statistical methods and programming languages like R and Python. Whether you need exploratory data analysis, hypothesis testing, regression modeling, machine learning, or data visualization, I can tailor my services to meet your specific analytical needs. I am dedicated to providing accurate, reliable, and actionable insights to guide your decision-making processes. 🌐 Why Choose Me? ✅ Expertise: With a strong academic background and hands-on experience in bioinformatics and statistical data analysis, I bring a wealth of knowledge and expertise to the table. ✅ Custom Solutions: I understand that every project is unique. I take the time to understand your specific objectives and requirements, offering customized solutions that address your challenges effectively. ✅ Quality & Timeliness: I am committed to delivering high-quality results within agreed-upon deadlines. Your satisfaction is my top priority. ✅ Collaboration & Communication: I believe in fostering strong client relationships built on trust, collaboration, and open communication. I will keep you informed throughout the project, ensuring that your vision is realized. 📬 Let's Get Started! If you are ready to leverage the power of bioinformatics and statistical data analysis for your research or business, I am here to help. Reach out to me through Upwork messaging, and let's discuss how we can work together to unlock the potential of your data. I look forward to partnering with you on your bioinformatics and statistical data analysis journey!
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Data Science
    Data Engineering
    Microbiology
    Multivariate Statistics
    Machine Learning
    Coursework Assignment
    Statistical Analysis
    Exploratory Data Analysis
    Python
    Academic Writing
    R
    Executive Support
    Bioinformatics
    Data Analysis
  • $110 hourly
    1. BASIC STATS * Principal Software Engineer 1 @ Illumina, Inc. * PH. D. Molecular Biology, Vrije Universiteit, Amsterdam (1996) * 22 Years of Bioinformatics and Data science experience (Python, some R) 2. CURRENT ACCOMPLISHMENTS * Illumina Target Analysis Platform development Part of the team that designed and developed the Illumina Target Analysis Platform (iTAP) for the analysis of large genomics datasets for Drug Target discovery. Developed several webapps for the query and visualization of large GWAS and PHEWAS data sets. * Improve treatment options for patients and clinical trial enrollment. Applied NLP technologies to extract treatment options from the medical literature and clinical trials. 3. PREVIOUS ACCOMPLISHMENTS * Developed large
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Genomics
    Python
    Science
    Data Science
    Bioinformatics
  • $50 hourly
    Hi there! I am senior Bioinformatician and Data scientist. I have Developed and applied bioinformatics tools to process, analyze, and interpret high throughput datasets, including, RNA-seq, Chipseq and single cell RNA-seq. I have developed Website for protein antigenicity and binding affinity prediction. I am well familiar with Python programming, Linux system, R studio, Perl, Machine learning, Shiny R app development, Biological websites, in-silico Drug designing and discovery, genomics and proteomics analysis, MATLAB, JAVA, and associated libraries. I have worked on NGS data analysis, PacBio Data analysis, MD simulation(2000ns), docking, QSAR, GWAS, Dotplot and much more. You got any task related to bioinformatics or any field of Biology, i will do it according to requirement and deadline in fair price.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Sequence Analysis
    RNA
    Data Science
    Molecular Biology
    Genomics
    Biochemistry
    Microbiology
    DNA
    Bioinformatics
    Biotechnology
  • $50 hourly
    Technical Skills • Scientific data management: o Analysis and Clinical reporting of Diagnostic, Prognostic and Therapeutic associations of genomic biomarkers in somatic cancers in various aspects like, Gene summaries, Disease ontologies, Drug Databases, Variant databases (ClinVar, COSMIC, TP53 database), Oncology databases (OncoKb, Mycancergenome, PharmGKb, CIVIC), collectively for Variant classifications (CAP/AMP/ASCO classification, FDA Evidence level, etc) using Drug labels, Clinical practice guidelines, Scientific publications and Clinical trials. o Literature analysis for competitive intelligence using Thomson Reuters, Bioinfobank, clinicaltrials.gov, FDA, PubMed, etc. Compilation of literature data and presentation of analyzed data in project meetings. • Experimentation: o In vivo Experiments: Evaluation of pharmacodynamic activities of new chemical compounds (more than 400) in relevant animal models for various drug targets. Consideration of physicochemical properties and pharmacokinetic data for selection of dose regimen. o Ex vivo analysis: Temporal profiling of biomarkers in plasma and tissue samples by ELISA method, Analysis of biochemical parameters in blood and plasma, Histological analysis. o Instruments: von Frey Filaments, Dynamic Plantar Aesthesiometer, Incapacitance meter, Plethysmometer, Randall Selitto, Easylyte (Ion Analyzer), Biotek microplate reader, Randox (Chemistry analyzer), Microtome, etc. • Documentation: o Creation of SOPs/Work instructions/forms, and documentation related to SOP/WI validations, Implementation of Quality Management System (QMS) for document control o Data analysis, interpretation, report preparation of generated experimental In Vivo data. Maintaining data in electronic lab notebook, maintaining documents related to laboratory, instrumentation and experimental work. o Data compilation and analysis of experimental results using softwares such as Graphpad prism, Chem draw, ImageJ, Electronic lab notebook, etc. • Lab management: o Interaction with multiple stakeholders: internal departments and external vendors for resource procurement (using SAP and ARIBA softwares), maintenance and calibration of lab instruments, human resources management for carrying out lab activities. Research Project: • Dissertation thesis in M. S. (Pharm.) titled, ‘‘Evaluation of efficacy of combination of rutin and prednisolone against adjuvant induced arthritis in rats’’ Under the guidance of Dr. S. Ramakrishna (Principle Scientist) in Department of Pharmacology, IICT, Hyderabad. • Project in B. Pharm: A survey on: The chances of occurrence of prescription errors during dispensing of LA/SA: Look Alike Sound Alike Drugs. Under the guidance of Prof. Mrudula Bele in N.D.M.V.P.S. College of Pharmacy, Nashik
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Cellular Biology
    Data Interpretation
    Data Curation
    Voice-Over
    Voice Acting
    Molecular Biology
    Article Curation
    Marathi
    Genetics
    Pharmaceutical Industry
    Biochemistry
    Biotechnology
  • $75 hourly
    ⭐⭐⭐ Expert-Vetted, top-1% talent on Upwork ⭐⭐⭐ Are you struggling to develop or optimize your R Shiny applications? If yes, then you are at the right place. As an experienced R Shiny developer and bioinformatician, I can help you develop, audit, or optimize your R/Shiny applications. With my expertise in UI/UX development and data science, I can provide custom solutions that are both functional and visually appealing. WHY ME ----- ✅ Over 12 years of programming experience in R and 8+ years of experience developing Shiny applications ✅ PhD in Plant Biology from UT Austin and over 6 years of postdoctoral research experience. ✅ Advanced and rapid developer of Shiny applications, with a flexible and adaptable approach that allows me to handle steep learning curves with reasonable time frames. ✅ My background in biology and bioinformatics, and the domain-specific knowledge necessary to develop software solutions will help to meet your specific business needs. WHAT I OFFER ----- ✅ R Shiny application development, audit, or optimization (base Shiny, Golem, or Rhino) ✅ R package development, audit, or optimization ✅ Plumber API development ✅ Bioinformatics pipeline development (Docker-based systems for deployment to AWS or GCP) ⭐ I am committed to going above and beyond for my clients and always strive to deliver high-quality projects on time and within budget. Have questions? I’m just a message away from you! 🤝
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Statistical Analysis
    R
    SQL
    Machine Learning
    Git
    Microsoft Excel
    Big Data
    Data Mining
    R Shiny
    Data Science
    Docker
    Data Visualization
    Data Analysis
    Dashboard
    Bioinformatics
  • $25 hourly
    I have 10+ years of post-PhD experience in crafting best in-class solutions for complex questions using statistical and machine learning approaches on a highly collaborative team. Following are a broad overview bioinfrmatics services I provide. Variant discovery: Gain insights into the influence of genetic variation on human disease, ancestry, and evolution by utilizing GATK-based workflows or your preferred analysis tools for Whole Exome Sequencing (WES) and Whole Genome Sequencing (WGS) data. My variant discovery pipeline detects diverse variants, filters and annotates them, and integrates with curated resources to identify potential causative variants. Sequence alignment of WGS and WES( Bowtie2, BWA, Stampy, MOSAIK, Novoalign etc) Variant discovery from aligned reads (Picard, GATK, Samtools, VCFtools, Freebays, VarDict, CNVantor, ExomeCNV, BreakDancer, etc). Variant annotation (ANNOVAR, VEP etc) Integrating results with curated resources (OMIM, HPO, COSMIC etc). Transcriptomics: RNA-seq is a versatile method for gene expression profiling in diverse species, enabling precise measurement of gene and transcript levels, identification of alternative transcripts, characterization of gene fusions, detection of single nucleotide variants, and discovery of novel gene isoforms. Tertiary analysis involving differential expression, enrichment, and co-expression network analysis offers a comprehensive view of affected genes and pathways. My services include: Sequence alignment of reads (STAR, Tophat2, HISAT2) Estimation of transcript abundance (Kallisto, RSEM) Differential expression analysis (DESeq2, EdgeR, EBSeq ) Network analysis of gene expression (GSEA, WGCNA, Cytoscape, EricScript) Epigenomics and gene regulation: Epigenetic mechanisms play a vital role in normal growth and development, but their deregulation contributes to diseases like cancer and diabetes. Our services facilitate exploration, integration, filtering, annotation, statistical analysis, and visualization of results from peak callers, empowering researchers to gain insights from their epigenetic data. Estimation of methylation level. (BSMAP, Bismark, BS-Seeker2) Analysis of chromatin conformation capture experiments. Analysis of Chip-seq experiments (MACS2, SICER, GEM, MEME Suite, HOMER). Identification of transposable element insertion from whole genome data (TE-Detective). Microbial Genomics: By employing experimental approaches and computational methods, researchers are gaining insights into the shifts in microbial composition in human health, contamination of food sources, susceptibility of agricultural plants to diseases, infectious disease outbreaks, and environmental impact assessment. Our data analytics support encompasses meta-taxonomic profiling, metagenomic taxonomic classification, characterization of uncultivated microbes, and RNA profiling from diverse microbial environments. My services include: Development of metagenomic assembly pipeline (QIIME2, MetaBAT, MaxBin, MetaSPAdes, MEGAN). Profiling the composition of microbial communities Analysis of metabolic pathways in the microbial community. Taxonomic classification of Microbial community. (Kraken2, Sourmash) Single-cell genomics: Single-cell genomics methods have transformative potential in studying physiology, developmental biology, and anatomy in health and disease. Utilizing next-generation sequencing-based assays like RNA-seq, optimized for single-cell analysis, enables in-depth characterization of genetic and functional traits of individual cells. My services include: QC, analysis, and exploration of single cell RNA-seq data (Scater, Seurat). Single cell sequencing read alignment. (Bowtie2, STAR). Detailed analysis of single cell expression data (Monocle, MAST, SCDE, BPSC) Variant discovery from single cell data (HoneyBADGER, chromVAR, Monovar). CRISPR bioinformatics: CRISPR screens, vital for high-throughput screening, rely on the CRISPR system. Bioinformatics plays a crucial role in analyzing and interpreting data from CRISPR-based studies. My CRISPR bioinformatics services include: gRNA design and analysis. Off-target analysis. Functional analysis. AI/ML and DevOps service: Machine learning algorithms for DNA/protein sequence analysis and classification. Predictive modeling for personalized medicine and drug discovery. Deep learning models for image analysis in microscopy and medical imaging. Natural language processing (NLP) for text mining and literature analysis. Reinforcement learning for optimizing experimental designs and parameter optimization. AI-driven systems for variant calling, genome annotation, and variant interpretation. Containerization platforms like Docker and Kubernetes for efficient software packaging and deployment. Cloud computing platforms (e.g., AWS, Google Cloud, Azure) for scalable and on-demand computing resources. Workflow management systems like Nextflow .
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Image Analysis
    Sequence Analysis
    pandas
    Genomics
    NoSQL Database
    MySQL
    Artificial Intelligence
    Data Mining
    Bioinformatics
    Machine Learning
    Data Analytics
    Python
    R
  • $35 hourly
    As a highly skilled and experienced Python developer, bioinformatician, and data scientist, I am passionate about using technology to solve complex problems and uncover insights from large datasets. With a background in Bioengineering degree and data science projects, I have developed expertise in data analysis, visualization, and scripting with Python, and machine learning, including frameworks such as Keras, FastAI, Sklearn and AWS infrastructure. Whether you need help with python scripts, data analysis, bioinformatics, machine learning, or software development, I have the skills and experience to deliver high-quality work that meets your needs. I have a proven track record of delivering projects on time and within budget, and I am always looking for new challenges and opportunities to learn and grow. In addition to my technical skills, I am a clear and effective communicator who is committed to understanding your needs and delivering results that exceed your expectations. I am confident that I can help you achieve your goals and look forward to working with you on your next project.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    AWS CloudFormation
    Bash
    Docker
    Scientific Writing
    Linux
    Machine Learning
    pandas
    Git
    R Shiny
    R
    Data Visualization
    Python
    Genomics
    Data Analysis
    Bioinformatics
  • $20 hourly
    Welcome to the Genomics Lab, a distinguished team of experts specializing in Biotechnology, Bioinformatics, and Computer Science. We provide a comprehensive array of specialized services tailored to precisely address your requirements, Genomics, Transcriptomics, Proteomics, Metagenomics, Mitogenomic, Virogenomics and Pharmacogenomics: 1.Bioinformatics Genomics: Next-Generation Sequencing (NGS) data analysis Comparative genomics Detection and annotation of genetic variants Functional Genomics, encompassing Gene Ontology and KEGG Pathway analysis Phylogenetic analysis Prediction of miRNA structures and their target sites 2.Bioinformatics Transcriptomics: RNA-seq data analysis Differential expression analysis 3.Bioinformatics Proteomics: Analysis of Protein-Protein Interactions Molecular Dynamics (MD) and Simulation studies 4. Bioinformatics Metagenomics: Whole-genome sequencing-based analysis 16S rRNA sequencing-based analysis 5. Bioinformatics Pharmacogenomics: The study of how an individual's genetic makeup influences their response to drugs, paving the way for personalized medicine Our state-of-the-art Genomics Lab boasts cutting-edge facilities, including high-performance computing with multi-core capabilities. Our team amalgamates profound expertise in these domains, fortified by a distinguished track record of successful projects and achievements. We are steadfast in our commitment to deliver top-tier results, leveraging the latest technologies to ensure precise, error-free, and efficient outcomes. Allow the Genomics Lab to become your trusted partner in advancing your research endeavours and achieving your scientific aspirations. Contact us today to initiate a discussion on how we can seamlessly support your forthcoming projects.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Adobe Illustrator
    Graphic Design
    Presentation Slide
    Graph
    Formatting
    Content Writing
    R
    Scientific Illustration
    Life Science
    Science
    Biotechnology
    Genetics
    Genomics
    Bioinformatics
    Biology
  • $50 hourly
    I'm a doctor of pharmacy and I have more than 9 years of experience in Life Sciences & AI projects including Researches, Sales, Business Development, and Regulatory. I got contracts with various international companies including: Wisecube AI (US), Stem Healthcare (UK), John Snow Labs (US), Interlabo (DZ), Sunshine (US), Genomic Expression (US), Shape N Link (France), Anasoft Consulting (US), Giant Health Event (UK), Perleberg (France), Atacana Group (Italy), ColVisTec AG (Germany), Clarityse LTD (UK), Pharma Biot Expert (France), Furnace Filters Canada (Canada). - Sales & Business Development: Wisecube AI (US), Interlabo (DZ), Giant Health Event (UK), Pharma Biot Expert (France)... - Researches: John Snow Labs (US), Genomic Expression (US), Shape N Link (France), Atacana Group (Italy), ColVisTec AG (Germany)... - Regulatory: John Snow Labs (US), Interlabo (DZ)... - Field Auditing: Stem Healthcare (UK)... I speak French, English and Arabic Fluently!
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Arabic
    Medical Device
    Database
    Project Management
    Drug Regulation
    Pharmaceutical Industry
    French
    Microsoft Excel
  • $25 hourly
    Currently, I'm enrolled in the PhD program to study, Bacteria-phage intersection to combat AMR. I completed my M.Sc. in Biotechnology, majoring in virology and Bioinformatics. Now I work as a Senior Researcher in the Virology Laboratory of icddr,b (International Centre for Diarrhoeal Disease Research, Bangladesh). With more than 7 years of experience, I can provide you with top-notch support as a life-science writer, systematic reviewer and editor. As a first author, I have published articles in high-impact journals; including Nature Scientific Reports, Journal of Medical Virology, Vaccine and IJID. Additionally, I worked as a reviewer for well-recognized journals. Designing is my hobby, so I did several design projects as a freelancer, including logos, web and product packages. I also love photography and got a National Award in 2011, ‘Photographir Tukitaki’ means ‘Small task in Photography’, one of my best seller books on photography written in the Bengali language. ‘R Complex’ and ‘Proxy Life’ are my two science fiction books.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Microsoft PowerPoint
    Scientific Writing
    English
    Writing
    Epidemiology
    Molecular Biology
    Creative Writing
    Academic Writing
    Adobe Photoshop
    Adobe Illustrator
  • $60 hourly
    I am an eager Registered Dietitian Nutritionist (RDN) who enjoys all things food and nutrition. I have a passion for helping people and advancing the nutrition field.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    English
    Proofreading
    Writing
    Review or Feedback Collection
    Feedback & Satisfaction Survey
    Food & Supplements
    Counseling
    Arts & Crafts
    Content Writing
    Nutrition
    Dietetics
    Online Writing
    Review
    Food & Beverage
    Canva
  • $45 hourly
    Hi there! I'm a data analyst with over 7 years of experience in bioinformatics and biostatistics. I have a PhD and postdoctoral experience in omics data analysis in the field of oncology and health science. I'm skilled in managing different types of data from various sources and technologies. I use mainly bash and R to develop customized pipelines for in-depth data analysis, including cleaning, preprocessing, statistical analysis, and visualization. I also use R Shiny to develop interactive online applications. In addition to my technical skills, I'm also an experienced scientific writer and reviewer. I have published several papers in peer-reviewed journals in the field of health science. I'm a highly motivated and results-oriented individual with a strong work ethic. I'm confident that I can make a significant contribution to your project. Please feel free to contact me to discuss your project in more detail. Thanks Samad E.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Linux
    Data Mining
    Bioinformatics
    Scientific Research
    R Shiny
    Genomics
    Data Processing
    Machine Learning
    Exploratory Data Analysis
    Data Analysis
    Statistical Analysis
    R
    Statistics
    Data Visualization
    Data Analytics
  • $31 hourly
    I'm interested in studying and deciphering cells behaviour with multiple "omics" approaches: RNA-seq, ChIP-seq, ATAC-seq, DNAase-seq ecc. My main goal is to shed light on complex biology-related questions, taking on the resulting challenges with dedication.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Biology
    Bioinformatics
    Molecular Biology
    Bash
    Statistical Infographic
    RNA
    DNA
    Biotechnology
    Experiment Design
    Machine Learning
    Data Science
    Python
    Data Analysis
    R
  • $31 hourly
    I'm a freelance researcher with experience in a wide variety of projects, although mostly in the areas of psychology and biology. My love for statistics and data analytics is on pair with my love for human behavior, I like to maintain a high level of communication with my clients to make sure we're always on the same page regarding their project, and they know what's happening even if they leave the technicalities to me. I'll be happy to help with your project as much as I can!
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Quantitative Analysis
    Biostatistics
    Psychometrics
    Survey Design
    Research Methods
    Psychology
    Survey Data Analysis
    Data Science
    Statistical Analysis
    RStudio
    Data Analysis
    Statistics
    A/B Testing
    R
    Python
  • $50 hourly
    A bioinformatician with 5 years plus of experience in developing custom NGS pipelines for various “omics” experiments, and building solutions for maintaining and querying large genomics datasets. Competent in using Linux-based operating systems, with a deep knowledge of key programming languages and related resources such as Java, Python, R, Bioconductor, etc. Strong analytical and problem-solving skills. I have good expertise in the following: - Quality checks and detection of contamination in FASTQ files. - Whole-exome/genome sequencing: starting from raw FASTQ files to variant calling. Also, I do various analyses on the VCF files. - RNA-seq: starting from raw FASTQ files to FeatureCounts and Differential Expression analysis between two or more conditions, pathways analysis... - ChIP-seq and ATAC-seq: starting from FASTQ files to motif annotation and analysis. I can perform differential accessibility analysis. - Bisulfite sequencing: methylation analysis starting from FASTQ files. - Single-Cell RNA-seq: cells clustering analysis, differential expression analysis, pathways analysis... - Metagenomics analysis: identification of the content of the samples: Viruses, Bacterial... - Strong expertise in R, Docker. - Beginner in proteomics: I can work on output from MaxQuant, Differential Expression of proteins... - Good knowledge of Shiny R - Classical machine learning: supervised and unsupervised learning using Python
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Bioinformatics
    Data Analysis
    R
    Python
  • $55 hourly
    ✨ Specialized in Advanced Visualizations and Automation✨ Proficient in Power BI, Excel, Python, Power Automate, SQL, Power Apps, Knime Analytics. 🟢 Pixel Perfect Reports ▶️ MBA with 15+ years of experience - Strong Financial and Management background. 🔍 Why Choose Me? 1. 📊 Advanced Analysis Skills: Transforming complex data into actionable insights with expertise in Power BI, Excel, and Python. 2. 🎨 Design & Aesthetics Expertise: Creating visually stunning, engaging reports and dashboards using Figma and other design tools. 3. 📈 Robust Business Acumen: Aligning data solutions with your strategic business goals, backed by my MBA and 15+ years of corporate experience as a business executive. 🛠️ What I Offer: - Power BI: Intricate data models and insightful analyses with Power Query, M language, and DAX. - Excel: Comprehensive data management with advanced formulas, Power Query, Pivot, DAX, and VBA. - Power Automate: Customized solutions for streamlining operations, specializing in complex integrations. - Database Management: Proficient in PostgreSQL, MySQL, and MongoDB for efficient data handling. - Python Data Analysis: Deep insights and stunning visualizations with Pandas, NumPy, Matplotlib, and Seaborn. - Web Scraping: Structured, clean data from the web using BeautifulSoup, Scrapy, and Selenium. - Knime Analytics: Advanced data ingestion, transformation, and analysis for Machine Learning and scientific projects. 🌟 Let's transform your data challenges into opportunities. Reach out to explore data-driven solutions for your business. 🌟
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Microsoft Teams
    Microsoft Power Automate
    Microsoft SharePoint
    Microsoft Excel
    KNIME
    Power Query
    Microsoft Power BI
    SQL
    Python
  • $30 hourly
    Hello! Welcome to my Upwork profile. I'm an experienced bioinformatician and data scientist with three years of experience in freelance work and teaching bioinformatics courses online. Below are the top projects I have completed as a freelancer: 1. Python script that uses API to find protein-protein interactions of all human proteins and fetch their protein sequences (2023) 2. Python script to fetch SNP records by providing genes through Ensembl REST API (2022) 3. Python script to fetch chemical interactions by providing genes through BioGRID REST Service (2022) 4. Python script that takes a list of genes and provides protein-protein interaction graphs through the string database and Network X library (2022) 5. Complete NGS analysis through Galaxy and Linux (2022) 6. Finding antimicrobial resistance genes in E. coli through different bioinformatics tools (2022) 7. Python script to make ADF plots of two different populations by using VCF files (2022) 8. R script to analyze RNA Seq data through DESEQ2, KEGG, and GSEA analysis through Clusterprofiler package (2021) 9. Python script to calculate the features of amino acids and store them in a single matrix (2021) 10. Multiple sequence alignment of all variants of Covid-19 (2021) 11. Linux script/pipeline to blast, align, and build a phylogenetic tree (2021) 12. Multiple sequence alignment and phylogenetic tree generation are done using the Biopython library of Python, and then visualizing closely related sequences by making network graphs through the NetworkX library (2021) 13. Superimpositions of two proteins by making Python user-defined functions and analyzing them in PyMOL (2021) 14. Studying the relationship between Sars-Cov2 and other coronaviruses by sequence comparison through Python and R (2020) 15. Differentially expressed genes analysis through R, then based on DEGs performed functional analysis through DAVID and GenCLiP, and network analysis through STRING and Cytoscape software (2020) 16. Python script to do standalone and command line blast through the Biopython package (2021) I possess excellent programming skills in Python, Biopython, R, MATLAB, and Linux Shell/Bash Scripts. Besides programming, I also offer writing services depending on client requirements.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Web Scraping
    Virtual Assistance
    Data Science Consultation
    Data Science
    Data Scraping
    Data Entry
    Data Extraction
    Data Analysis
    Bash Programming
    R
    Python
    Bioinformatics
  • $10 hourly
    I was working as Account Manager/Sales representative at PROQUINORTE, UNIPESSOAL LDA since 01/04/2023 to 31/03/2023. I received my degree in Biology from Havana University, Cuba in 2009 and then a Diploma in Higher Education (2011) from Universidad Central de Las Villas, Cuba; where I became a member of the staff of the Biology Department, from 2009 to 2011. Then, I was granted by FCT, obtaining my PhD in Biology from the University of Porto in 2017 with the thesis entitled Proteomics and Transcriptomics of Venomous Animals. Afterwards, I was hired as Research Assistant to coordinate the Molecular Biology and Proteomics platform/facilities in the framework of the European Marine Biological Resource Centre (EMBRC-PT) from 01/10/2017 to 30/09/2018. In October 2018, I was hired as Assistant Researcher/Co-manager by the project MOREBIVALVES/CIIMAR-UP - to detect Differentially Expressed Genes/Proteins involved in the depuration of biotoxins in contaminated bivalves, combining toxicological and proteogenomic approaches. Some outputs of my CV includes 2 sections of books, 20 articles (14 as first author) in SCI journals (Q1-topQ2: NPJ Biofilms Microbiomes, Marine Drugs, Toxins, Genomics, Int. J. Mol. Sci., Front. Mar. Sci., Antibiotics, Environ. Res.), 21 events participation, supervised 2 MSc dissertations and 1 work of course completion of LSc/BSc and co-supervised 2. I am motivated in the application of OMICs approaches and bioinformatic tools for the high-throughput discovery of bioactive peptides with biomedical and industrial application, as well as the use of proteogenomic in biomarkers identification.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Blockchain, NFT & Cryptocurrency
    Bioinformatics
    Product Management
    Logo Design
    Data Analysis Expressions
    Scientific Literature Review
    RNA
    Academic Editing
    Academic Research
    Medical Writing
    Research & Development
    Science Tutoring
    Writing
    Translation
  • $10 hourly
    In my bachelors and master studies, I have been working on different projects assignments and presentations. I can help you in your studies or any projects related to writing, making a handsome assignment or presentation. In a short time, I can help you with your work. You will find honest, expert and punctual in my work. So feel easy to contact me any time.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Blog Content
    Microsoft Word
    Business Presentation
    Report Writing
    Academic Writing
    Content Editing
    Science Tutoring
    Article Writing
    Essay Writing
    Microsoft Excel PowerPivot
    Microsoft PowerPoint
    Education
    IBM SPSS
    Data Analysis
  • $40 hourly
    Master of information science with experience in academic research, data analysis, sales, staff training, customer service excellence, and editing. Professional experience also includes: web content management, market research, scheduling, and teaching. Currently providing consulting and freelance services on a part-time basis for business plan development, competitive intelligence research, market research, and virtual office management.
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Business Analysis
    Business Intelligence
    Industry Research
    Academic Writing
    Online Research
    Competitive Analysis
  • $10 hourly
    I am a bioinformatician with 3 years experience in following domains of bioinformatics: • Next-generation sequence data analysis (ExomeSeq, RNAseq) • Metagenome data analysis • Copy number variation identification • Targeted variant Variant calling and Result interpretation • High-throughput workflow development • SNP, STR analysis • Forensically relevant markers detection • Insilico Structure and function prediction of proteins • Report writing in HTML5, CSS, javascript • Phylogenetics I have worked in many different kinds of research projects during my education and job where bioinformatics used as a key to solving the questions. I am mostly interested in NGS data analysis -based projects, and especially those that have to do with exome and metagenome analysis. However, I am always ready to learn new things in the field of bioinformatics. For me, my client’s satisfaction matters the most. I will give the best with my experience to complete my client’s projects. Looking forward to hearing from you!
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Report Writing
    Molecular Biology
    Biology
    Academic Writing
    Genomics
    Bioinformatics
    Biotechnology
    Microbiology
    Data Science
    Data Visualization
    Data Analysis
    R
    Python
  • $100 hourly
    SUMMARY OF QUALIFICATIONS • Highly motivated scientist with a background in computational biology, cancer biology, and drug discovery. • Demonstrated ability to work with multidisciplinary teams consisting of scientists and clinicians. • Successful leader of multiple simultaneous collaborative and independent time-sensitive projects. • Track record of training peers in molecular biology and bioinformatics techniques. • Effective presenter and communicator of scientific research (presented at 15+ conferences). PROFESSIONAL & RESEARCH EXPERIENCE 2022 – Present: Postdoctoral Associate, Computational Oncology, University of Miami Sylvester Comprehensive Cancer Center, Myeloma Institute. Advisors: Ola Landgren, M.D., Ph.D., Francesco Maura, M.D. • Develop new and improve existing high dimensional data-processing pipelines of NGS data using nextflow, SLURM, samtools, bamtools, FASTQ, and docker. • Generate complex algorithms for NGS data analysis and visualization in the context of cancer genomics studies involving biomarker discovery using bash and R scripting. 2016 – 2022: Graduate Research Assistant, Regenerative Biology, University of Maine and University of Miami, Advisor: Sandra Rieger, Ph.D. • Analyzed transcriptomic and proteomic data from animal models using R scripting and Scaffold software. • Investigated wound-healing and chemotherapy-induced peripheral neuropathy using fluorescence confocal microscopy, qPCR, immunohistochemistry, western blotting, and DNA cloning. 2013 – 2016: Undergraduate Research Assistant, Medicinal Chemistry and Molecular Pharmacology, Purdue University. Advisor: Vincent Jo Davisson, Ph.D. • In-depth experience of early-stage drug discovery through high-throughput screening of vast compound libraries using computational and biochemical techniques and fluorescence polarization assays. • Introduction to computational molecular visualization using PyMOL and generation of computational fragment-based libraries using Schrödinger’s Glide docking software. PROFESSIONAL INTERESTS • Provide valuable contributions to an interdisciplinary team dedicated to improving human health. • Advance drug discovery by using computational biology to address key challenges in oncology, immunology, toxicology, and regenerative medicine. EDUCATION 2016 – 2022: Ph.D., Molecular and Cellular Biology, University of Miami Department of Biology, Coral Gables, FL. Thesis Advisor: Sandra Rieger, Ph.D. “The Role of Epidermal Reactive Oxygen Species in Paclitaxel-Induced Cutaneous Sensory Axon Degeneration.” • Good News Liason - Gathered and organized departmental news to announce at weekly seminars. 2011 – 2016: B.S., Pharmaceutical Sciences, College of Pharmacy, Purdue University, West Lafayette, IN. Thesis Advisor: Vincent Jo Davisson, Ph.D. “Binding mechanisms for PCNA PIP-Box.” SELECTED PRESENTATIONS AND PUBLICATIONS Cirrincione, Anthony M., et al. “Tracking the earliest genomic events in multiple myeloma life-history.” Blood 2022; 140 (Supplement 1): 1553–1555. Cirrincione, Anthony M., et al. "Longitudinal RNA sequencing of skin and DRG neurons in mice with paclitaxel induced peripheral neuropathy." Data 7.6 (2022): 72. Cirrincione, Anthony M., et al. "Paclitaxel-induced peripheral neuropathy is caused by epidermal ROS and mitochondrial damage through conserved MMP-13 activation." Scientific reports 10.1 (2020): 1-12. Cirrincione, Anthony M., and Sandra Rieger. "Analyzing chemotherapy-induced perip
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Biostatistics
    Statistical Analysis
    Data Analysis
    Microsoft Excel
    ImageJ
    Pharmaceuticals
    Pharmacology
    Cellular Biology
    Molecular Biology
    Data Visualization
    Bioinformatics
    Scientific Computation
    R
  • $75 hourly
    I'm a Bioinformatics Scientist with a penchant for finding applications for machine learning in the life sciences. Whether you're after a novel diagnostic, drug target, or mechanism of action, if you have any -omics data I can help. - Experience working with bacterial, human, and viral genetics. - Comfortable with Python and major machine learning modules (scikit-learn, xgboost, pytorch). - Specializes in employing machine learning to uncover causal biological features more reliably than traditional statistical methods from large genome collections Publications - Hyun JC, Monk JM, Hefner Y, Szubin R, Palsson BO. Global pathogenomic analysis identifies known and novel genetic antimicrobial resistance determinants in twelve species. Nature Communications. 2023;14: 7690. doi:10.1038/s41467-023-43549-9 - Hyun JC and Palsson BO. Reconstruction of the last bacterial common ancestor from 183 pangenomes reveals a versatile ancient core genome. Genome Biology. 2023;24: 183. doi:10.1186/s13059-023-03028-2 - Hyun JC, Monk JM, Palsson BO. Comparative pangenomics: Analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity. BMC Genomics. 2022;23: 7. doi:10.1186/s12864-021-08223-8 - Hyun JC, Kavvas ES, Monk JM, Palsson BO. Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens. PLOS Computational Biology. 2020;16: e1007608. doi:10.1371/journal.pcbi.1007608
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Microbiology
    Artificial Intelligence
    Genomics
    Bioinformatics
    Python
    Data Science
    Machine Learning
  • $80 hourly
    I am a physician, psychiatrist, cultural anthropologist and writer. For the last 30 years I have lived and worked in the Himalayan region while doing a body of research on the nature of the healthy mind amongst Tibetan lamas. My research has been successful, and I've published five books and many papers on it. My work has also won an award from the American Anthropological Association. I did this research as a professor at Nepal's national university. I also gave free medical care to all of the monasteries and villages I visited to do my research. I'm also a really good psychotherapist. I love working with people and helping them find out and become the person they really are -- their true self. I am now coming back to western civilization to lecture and organize conferences about the nature of the healthy mind. My goal is to take my research and change our idea of what a healthy mind is. It is important for humanity to have the correct idea of what a healthy mind is. As matters stand now, all societies bring up their young to have egos. My research has shown that the ego causes two broad realms of malady. It causes the individual people to suffer, and it causes the identity-based conflicts of racism, misogyny, terrorism, religious intolerance and war. We have found that, in contrast, the egoless mind is a healthy mind; given the paradox that the egoless mind has an ego. In keeping with these findings, the goal, once again is to change our notion of the healthy mind. In the meantime, as I transition back to working in America, I'd like to find some interesting work and income!
    vsuc_fltilesrefresh_TrophyIcon Genomic Data Analysis
    Academic Editing
    Cover Letter Writing
    Content Editing
    Scientific Writing
    Copy Editing
    Motivational Speaking
    Medical Editing
    Technical Writing
    Ghostwriting
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